Supercomputing Engineering Lab, Department of Computer Science
Graduate School of Information Science and Technology, Osaka University [Japanese]
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Parallelizing heterogeneous multi-scale biophysical simulation


Simulation of action potential propagation in cardiac cells

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  1. GPUPC

Keyword

GPGPU

Flint, a simulator of bio-physiological models

Flint Physiome.jp Flint Flint K3

(c) Physiome.jp

Automatic parallelization and optimization

Accelerating ODE-based Simulation of General and Heterogeneous Biophysical Models using a GPU
Tomohiro Okuyama, Masao Okita, Takeshi Abe, Yoshiyuki Asai, Hiroaki Kitano, Taishin Nomura, and Kenichi Hagihara
IEEE Transactions on Parallel and Distributed Systems, Vol. 25, No. 8, pp. 1966--1975, (2014-08).

insilicoSim: an Extendable Engine for Parallel Heterogeneous Biophysical Simulations
Eric Heien, Masao Okita, Yoshiyuki Asai, Taishin Nomura, and Kenichi Hagihara
In Proceedings of the 3rd International Conference on Simulation Tools and Techniques (SIMUTools 2010), Malaga, Spain, (2010-03).